Drug-Nucleic Acid Interactions

Chaires, Jonathan B.

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Table of contents
  • Table of Contentsv
  • Contributors to Volume 340ix
  • Prefacexiii
  • Volume in Seriesxv
  • Section I: Biophysical Approaches1
  • Chapter 1. Analysis and Interpretation of Ligand–DNA Binding Isotherms3
  • Chapter 2. Surface Plasmon Resonance Biosensor Analysis of RNA–Small Molecule Interactions22
  • Chapter 3. Simultaneous Measurement of Binding Constants and Unwinding Angles by Gel Electrophoresis51
  • Chapter 4. Linear and Circular Dichroism of Drug–Nucleic Acid Complexes68
  • Chapter 5. Rapid Screening of Structurally Selective Ligand Binding to Nucleic Acids99
  • Chapter 6. Calorimetric Techniques in the Study of High-Order DNA–Drug Interactions109
  • Chapter 7. Volume Changes Accompanying Interaction of Ligands with Nucleic Acids149
  • Chapter 8. Calculating Sequence-Dependent Melting Stability of Duplex DNA Oligomers and Multiplex Se165
  • Chapter 9. Thermal Denaturation as Tool to Study DNA–Ligand Interactions193
  • Chapter 10. Kinetics of Binding of Hoechst Dyes to DNA Studied by Stopped-Flow Fluorescence Techniqu212
  • Chapter 11. Scanning Force Microscopy of Nucleic Acid Complexes234
  • Chapter 12. Nuclear Magnetic Resonance Studies of Drug–DNA Complexes in Solution252
  • Chapter 13. X-Ray Crystallography of DNA–Drug Complexes282
  • Chapter 14. Molecular Modeling of Drug–DNA Complexes: An Update290
  • Section II: Chemical and Molecular Biological Approaches327
  • Chapter 15. Peptide Nucleic Acid Targeting of Double-Stranded DNA329
  • Chapter 16. Drug Interaction with Triple-Helical Nucleic Acids340
  • Chapter 17. Measurement of Covalent Drug–DNA Interactions at the Nucleotide Level in Cells at Phar358
  • Chapter 18. Targeting DNA through Covalent Interactions of Reversible Binding Drugs377
  • Chapter 19. Chemical Cross-Linking of Drugs to DNA396
  • Chapter 20. High-Resolution Footprinting Studies of Drug–DNA Complexes Using Chemical and Enzymati412
  • Chapter 21. Drug–RNA Footprinting431
  • Chapter 22. Footprinting Methods for Analysis of Pyrrole–Imidazole Polyamide/DNA Complexes450
  • Chapter 23. High-Resolution Transcription Assay for Probing Drug–DNA Interactions at Individual Dr466
  • Chapter 24. Use of DNA Molecules Substituted with Unnatural Nucleotides to Probe Speci.c Drug–DNA485
  • Chapter 25. Drug Interactions with Nucleosomes and Chromatin503
  • Chapter 26. Locating Cobalt-Binding Sites on DNA Using Restriction Endonucleases519
  • Chapter 27 Exploiting Anthracycline Scaffold for Designing DNA-Targeting Agents529
  • Chapter 28. Design, Synthesis, and Characterization of Polyintercalating Ligands556
  • Section III: Enzymology and Biological Approaches571
  • Chapter 29. Targeting Telomeres and Telomerase573
  • Chapter 30. Rapid, High-Throughput Engineering of Sequence-Specific Zinc Finger DNA-Binding Proteins593
  • Chapter 31. DNA Relaxation and Cleavage Assays to Study Topoisomerase I Inhibitors610
  • Chapter 32. In Vitro Human Immunodeficiency Virus Type 1 Integrase Assays624
  • Chapter 33. Use of Xenopus Egg Extracts to Study Effects of DNA-Binding Drugs on Chromatin Assembly,634
  • Author Index655
  • Subject Index689
Book details
  • Vendor Elsevier S & T
  • SKU 9780121822415
  • ISBN-13 9780080496900
  • Author Chaires, Jonathan B.
  • Category Science
  • Subject Research & Methodology

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This volume consolidates the key methods for studying ligand-nucleic acid interactions into a convenient source. Techniques that are examined range from biophysical and chemical approaches to methods rooted in molecular and cell biology.