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Table of contents
- Table of Contentsv
- Contributors to Volume 340ix
- Prefacexiii
- Volume in Seriesxv
- Section I: Biophysical Approaches1
- Chapter 1. Analysis and Interpretation of Ligand–DNA Binding Isotherms3
- Chapter 2. Surface Plasmon Resonance Biosensor Analysis of RNA–Small Molecule Interactions22
- Chapter 3. Simultaneous Measurement of Binding Constants and Unwinding Angles by Gel Electrophoresis51
- Chapter 4. Linear and Circular Dichroism of Drug–Nucleic Acid Complexes68
- Chapter 5. Rapid Screening of Structurally Selective Ligand Binding to Nucleic Acids99
- Chapter 6. Calorimetric Techniques in the Study of High-Order DNA–Drug Interactions109
- Chapter 7. Volume Changes Accompanying Interaction of Ligands with Nucleic Acids149
- Chapter 8. Calculating Sequence-Dependent Melting Stability of Duplex DNA Oligomers and Multiplex Se165
- Chapter 9. Thermal Denaturation as Tool to Study DNA–Ligand Interactions193
- Chapter 10. Kinetics of Binding of Hoechst Dyes to DNA Studied by Stopped-Flow Fluorescence Techniqu212
- Chapter 11. Scanning Force Microscopy of Nucleic Acid Complexes234
- Chapter 12. Nuclear Magnetic Resonance Studies of Drug–DNA Complexes in Solution252
- Chapter 13. X-Ray Crystallography of DNA–Drug Complexes282
- Chapter 14. Molecular Modeling of Drug–DNA Complexes: An Update290
- Section II: Chemical and Molecular Biological Approaches327
- Chapter 15. Peptide Nucleic Acid Targeting of Double-Stranded DNA329
- Chapter 16. Drug Interaction with Triple-Helical Nucleic Acids340
- Chapter 17. Measurement of Covalent Drug–DNA Interactions at the Nucleotide Level in Cells at Phar358
- Chapter 18. Targeting DNA through Covalent Interactions of Reversible Binding Drugs377
- Chapter 19. Chemical Cross-Linking of Drugs to DNA396
- Chapter 20. High-Resolution Footprinting Studies of Drug–DNA Complexes Using Chemical and Enzymati412
- Chapter 21. Drug–RNA Footprinting431
- Chapter 22. Footprinting Methods for Analysis of Pyrrole–Imidazole Polyamide/DNA Complexes450
- Chapter 23. High-Resolution Transcription Assay for Probing Drug–DNA Interactions at Individual Dr466
- Chapter 24. Use of DNA Molecules Substituted with Unnatural Nucleotides to Probe Speci.c Drug–DNA485
- Chapter 25. Drug Interactions with Nucleosomes and Chromatin503
- Chapter 26. Locating Cobalt-Binding Sites on DNA Using Restriction Endonucleases519
- Chapter 27 Exploiting Anthracycline Scaffold for Designing DNA-Targeting Agents529
- Chapter 28. Design, Synthesis, and Characterization of Polyintercalating Ligands556
- Section III: Enzymology and Biological Approaches571
- Chapter 29. Targeting Telomeres and Telomerase573
- Chapter 30. Rapid, High-Throughput Engineering of Sequence-Specific Zinc Finger DNA-Binding Proteins593
- Chapter 31. DNA Relaxation and Cleavage Assays to Study Topoisomerase I Inhibitors610
- Chapter 32. In Vitro Human Immunodeficiency Virus Type 1 Integrase Assays624
- Chapter 33. Use of Xenopus Egg Extracts to Study Effects of DNA-Binding Drugs on Chromatin Assembly,634
- Author Index655
- Subject Index689
Book details
- Vendor Elsevier S & T
- SKU 9780121822415
- ISBN-13 9780080496900
- Author Chaires, Jonathan B.
- Category Science
- Subject Research & Methodology
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This volume consolidates the key methods for studying ligand-nucleic acid interactions into a convenient source. Techniques that are examined range from biophysical and chemical approaches to methods rooted in molecular and cell biology.
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