Progress in Nucleic Acid Research and Molecular Biology

Moldave, Kivie

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Table of contents
  • Cover
  • Contentsv
  • Some Articles Planned For Future Volumesix
  • Chapter 1. Modulation of RNA Function by Oligonucleotides Recognizing RNA Structure1
  • I. RNA Structures: Targets of Interest2
  • II. Antisense Oligonucleotides5
  • III. Triple-Stranded Complexes19
  • IV. Oligonucleotides Identified through Combinatorial Approaches25
  • V. Conclusion38
  • References39
  • Chapter 2. Regulation of the DNA Methylation Machinery and Its Role in Cellular Transformation47
  • I. DNA Methylation Is a Covalent Epigenetic Modification of DNA49
  • II. DNA Methylation Represses Gene Expression by Two Different Mechanisms50
  • III. Enzymatic DNA Methylation Machinery53
  • IV. Coordination of DNA Replication and DNA Methylation Machineries55
  • V. Inhibition of DNMT1 Inhibits DNA Replication in Human Lung Cancer Cells63
  • VI. DNMT1 and Oncogenesis64
  • VII. Conclusions71
  • References72
  • Chapter 3. Lysosomal Multienzyme Complex: Biochemistry, Genetics, and Molecular Pathophysiology81
  • I. Introduction82
  • II. Discovery of Lysosomal Multienzyme Complex82
  • III. Components of the Complex84
  • IV. Composition, Stoichiometry, and Structure of Lysosomal Multienzyme Complex97
  • V. Plasma Membrane Complex of Elastin-Binding Protein, Cathepsin A, and Sialidase98
  • VI. Molecular Pathology of Lysosomal Multienzyme Complex99
  • VII. Future Perspectives105
  • References107
  • Chapter 4. Phosphoribosylpyrophosphate Synthetase and the Regulation of Phosphoribosylpyrophosphate115
  • I. PRPP and the PRPP Synthetase Reaction117
  • II. PRPP Utilization119
  • III. PRPP: Regulatory Role121
  • IV. PRPP Synthetase125
  • V. Regulation of PRPP Synthesis in Human Cells140
  • References145
  • Chapter 5. Ethanol Catabolism in Aspergillus nidulans: A Model System for Studying Gene Regulation149
  • I. Identification of Three alc Genes and Their Products, Which Are Responsible for Ethanol Catabolis152
  • II. AlcR: The Transcriptional Activator of the Ethanol Regulon in A. nidulans156
  • III. Induction of the alc Gene System: The Inducer167
  • IV. The CreA Repressor174
  • V. Mechanism of Regulation of the alc Genes180
  • VI. The alc System as a Heterologous Expression Tool in Fundamental Research and Biotechnology192
  • VII. Conclusions and Prospects195
  • References198
  • Chapter 6. The ROR Nuclear Orphan Receptor Subfamily: Critical Regulators of Multiple Biological Pro205
  • I. Introduction207
  • II. Cloning and Expression Pattern of RORs208
  • III. Structure of ROR Proteins212
  • IV. Characterization of ROR Response Elements214
  • V. Transcriptional Control by RORs217
  • VI. Genomic Structure and Chromosomal Localization224
  • VII. Targeted Knockouts of RORs226
  • VIII. Overexpression of RORs236
  • IX. Other Target Genes239
  • X. Concluding Remarks241
  • References242
  • Chapter 7. PDE4 cAMP-Specific Phosphodiesterases249
  • I. Entities Involved in cAMP Metabolism250
  • II. Cyclic Nucleotide Phosphodiesterase Families253
  • III. Cyclic Nucleotide Phosphodiesterases and Intracellular Targeting258
  • IV. PDE4 cAMP-Specific Phosphodiesterases261
  • V. PDE4 Gene Organization262
  • VI. Domain Structure of PDE4 Isoenzymes266
  • VII. Intracellular Targeting of PDE4 Isoforms279
  • VIII. Phosphorylation288
  • IX. Activation of PDE4A Isoforms through a PI-3 Kinase-Mediated Process298
  • X. Activation of the Long PDE4D3 Isoform by Phosphatidic Acid300
  • XI. Induction of PDE4 Isoforms301
  • XII. PDE4 Knockouts304
  • XIII. Conclusion305
  • References306
  • Chapter 8. Domain–Domain Communication in Aminoacyl-tRNA Synthetases317
  • I. Function and Domain Organization of AARSs318
  • II. Domain Functions Are Separable320
  • III. Noncovalent Assembly of Aminoacylation Systems Demonstrating Capacity for Communication323
  • IV. Examples of Domain–Domain Communication Revealed by Functional Analysis of Aminoacylation Effi325
  • V. Understanding Communication Based on Structural Analysis330
  • VI. Communication by Conformational Changes in tRNA Studied in Solution334
  • VII. Communication in Aminoacylation That Requires Covalent Continuity of the tRNA Demonstrated by F335
  • VIII. Domain Communication in Editing337
  • IX. Role of Induced Fit341
  • X. Conclusion345
  • References346
  • Index351
Book details
  • Vendor Elsevier S & T
  • SKU 9780125400695
  • ISBN-13 9780080522654
  • Author Moldave, Kivie
  • Category Medical
  • Subject Microbiology

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Progress in Nucleic Acid Research and Molecular Biology provides a forum for discussion of new discoveries, approaches, and ideas in molecular biology. It contains contributions from leaders in their fields and abundant references.